I do not think its that complicated Sidewinder, I did think of harmonics and magnetism build up but could not think of a suitable scenario for the delay in the time intervals. I think something unrelated is happening during the night that has an effect on that phase, I did think about any timers on the system for instance, but this would result in the trip time to be the same every night. I am thinking aloud as I type by the way so you will have to bear with me, any DNO switch overs would have been recorded by nsbs, I would however like to see the results and see if there is anything unusual.
If you did an experiment with electro magnetic fields for instance, usually the build up and dissipation could be measured with some accuracy so you could predict the intervals, this prediction would to some extent be constant and have a value, if you get my meaning. This would result in very similar trip times should this be the fault.
From the description of testing so far I would say that I would swap the tower effected for another and see if it occurs again, if only to rule out the tower itself, if it does happen again with a different tower I would investigate anything that occurs during the night, like air con units or lighting systems. I must admit I am stumped, and would like to find out the outcome. Very thought provoking.